huangqis at cs dot cmu dot edu

Computational Biology Department
Carnegie Mellon University
5000 Forbes Avenue
Pittsburgh, PA, 15213

Publications

• Expanding the coverage of spatial proteomics: a machine learning approach
  Huangqingbo Sun, Jiayi Li, Robert F Murphy*
  Bioinformatics, 40, no. 2 (2024): btae062.
  [paper] [software]

• Basal body organization and cell geometry during the cell cycle in Tetrahymena thermophila
  Huangqingbo Sun, Adam Soh, Lisa Mitchell, Chad Pearson, and Robert F. Murphy*
  Molecular Biology of the Cell, 34, no. 6 (2023): ar53.
  [paper] [software]
• Improving and evaluating deep learning models of cellular organization
  Huangqingbo Sun⁺, Xuecong Fu⁺, Serena Abraham, Shen Jin, and Robert F. Murphy*
  Bioinformatics, 38, no. 23 (2022): 5299-5306.
  [paper] [software]
• Evaluation of categorical matrix completion algorithms: toward improved active learning for drug discovery
  Huangqingbo Sun, and Robert F. Murphy*
  Bioinformatics, 37, no. 20 (2021): 3538-3545.
  [paper] [software]
• An Improved Matrix Completion Algorithm For Categorical Variables: Application to Active Learning of Drug Responses
  Huangqingbo Sun, and Robert F. Murphy*
  ICML 2020 Workshop on Real World Experiment Design and Active Learning, (2020).
  [paper]
• A MEMS variable optical attenuator with ultra-low wavelength-dependent loss and polarization-dependent loss
  Huangqingbo Sun, Wei Zhou, Zijing Zhang, and Robert F. Murphy*
  Micromachines, 9, no. 12 (2018): 632.
  [paper]

• CellOrganizer: Learning Morphological, Spatial, and Dynamic Models for Cellular and Subcellular Components
  Huangqingbo Sun, and Robert F. Murphy*
  Imaging Cell Signaling, Methods in Molecular Biology, 2800, no. 16 (2024), in press.
  
⁺ equal contribution, * corresponding author