Intrinsic Diversity in Primary Cilia Revealed Through Spatial Proteomics
Jan Hansen, Huangqingbo Sun⁺, Konstantin Kahnert⁺, Alexandra Johannesson, Kalliopi Tzavlaki, Casper Winsnes, Emmie Pohjahnen,
Jennny Fall, Mathias Uhlen, Ulrika Axelsson, Frederic Ballllosera Navarro, Anna Backstrom, Cecilia Lindskog, Fredric Johansson, Kalle von Feilitzen,
Angelica Delgado Vega, Anna Martinez Casals, Diana Mahdessian, Anna Lindstrand, Eini Westenius, Emma Lundberg*
bioRxiv (2024). [paper]
Flexible and robust cell type annotation for highly multiplexed tissue images Huangqingbo Sun, Shiqiu Yu, Anna Martinez Casals, Anna Bäckström, Yuxin Lu, Cecilia Lindskog, Emma Lundberg*, Robert F Murphy*
bioRxiv (2024). [paper][software]
Peer-reviewed papers
Expanding the coverage of spatial proteomics: a machine learning approach Huangqingbo Sun, Jiayi Li, Robert F Murphy*
Bioinformatics, 40, no. 2 (2024): btae062. [paper][software]
Basal body organization and cell geometry during the cell cycle in Tetrahymena thermophila Huangqingbo Sun, Adam Soh, Lisa Mitchell, Chad Pearson, and Robert F. Murphy*
Molecular Biology of the Cell, 34, no. 6 (2023): ar53. [paper][software]
Improving and evaluating deep learning models of cellular organization Huangqingbo Sun⁺, Xuecong Fu⁺, Serena Abraham, Shen Jin, and Robert F. Murphy*
Bioinformatics, 38, no. 23 (2022): 5299-5306. [paper][software]
Evaluation of categorical matrix completion algorithms: toward improved active learning for drug discovery Huangqingbo Sun, and Robert F. Murphy*
Bioinformatics, 37, no. 20 (2021): 3538-3545. [paper][software]
An Improved Matrix Completion Algorithm For Categorical Variables: Application to Active Learning of Drug Responses Huangqingbo Sun, and Robert F. Murphy*
ICML 2020 Workshop on Real World Experiment Design and Active Learning, (2020). [paper]
A MEMS variable optical attenuator with ultra-low wavelength-dependent loss and polarization-dependent loss Huangqingbo Sun, Wei Zhou, Zijing Zhang, and Robert F. Murphy*
Micromachines, 9, no. 12 (2018): 632. [paper]
Book chapters & technical reports
Learning Morphological, Spatial, and Dynamic Models for Cellular and Subcellular Components Huangqingbo Sun, and Robert F. Murphy*
Imaging Cell Signaling, Methods in Molecular Biology, 2800. Humana, New York, NY.