Huangqingbo (Paul) Sun

Dr. Sun is a Postdoctoral Scholar in the Department of Bioengineering at Stanford University, working under the mentorship of Dr. Emma Lundberg. He earned his Ph.D. in Computational Biology at Carnegie Mellon University, advised by Dr. Robert F. Murphy.

His research interests span computational biology, biostatistics, and statistical learning. Current work focuses on developing image-derived generative models of biological systems across multiple scales — from cellular to tissue levels — designed to characterize organizational variation across regions and individuals. He also maintains an active interest in the theoretical foundations of modern machine learning.

Current position
Postdoctoral Scholar
Lundberg Lab · Stanford BioE
Ph.D.
Computational Biology
Carnegie Mellon University
Research focus
Generative models
Spatial proteomics · Imaging

Selected recent publications

All publications →
2026
Generative machine learning unlocks the first proteome-wide image of human cells
Huangqingbo Sun, Konstantin Kahnert, Jan N. Hansen, et al., Emma Lundberg*
bioRxiv, 2026
2025
Intrinsic Diversity in Primary Cilia Revealed Through Spatial Proteomics
Jan N. Hansen, Huangqingbo Sun⁺, Konstantin Kahnert⁺, et al., Emma Lundberg*
Cell, 188(24): 6804–6824
2025
Flexible and robust cell type annotation for highly multiplexed tissue images
Huangqingbo Sun, Shiqiu Yu, Anna Martinez Casals, et al., Emma Lundberg*, Robert F Murphy*
Cell Systems, 16(9): 101374